LabLynx Wiki

LabLynx Wiki


Description

Open source, freely available (GPL license), easy to use C++ APIs

  • General Operation Classes including:
    • File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
    • String processing
    • Parameter Parsing
  • Statistical Genetic Specific Classes including:
    • Handling Common file formats – SAM/BAM, FASTQ, GLF, VCF (coming soon)
      • Accessors to get/set values
      • Indexed access to BAM files
    • Utility classes, including:
      • Cigar – interpretation and mapping between query and reference
      • Pileup – structured access to data by individual reference position

Can be used to create your own C++ programs.

LIMSpec Wiki

LIMSpec Wiki


Description

Open source, freely available (GPL license), easy to use C++ APIs

  • General Operation Classes including:
    • File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
    • String processing
    • Parameter Parsing
  • Statistical Genetic Specific Classes including:
    • Handling Common file formats – SAM/BAM, FASTQ, GLF, VCF (coming soon)
      • Accessors to get/set values
      • Indexed access to BAM files
    • Utility classes, including:
      • Cigar – interpretation and mapping between query and reference
      • Pileup – structured access to data by individual reference position

Can be used to create your own C++ programs.

Bioinformatics Wiki

Bioinformatics Wiki


Description

Open source, freely available (GPL license), easy to use C++ APIs

  • General Operation Classes including:
    • File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
    • String processing
    • Parameter Parsing
  • Statistical Genetic Specific Classes including:
    • Handling Common file formats – SAM/BAM, FASTQ, GLF, VCF (coming soon)
      • Accessors to get/set values
      • Indexed access to BAM files
    • Utility classes, including:
      • Cigar – interpretation and mapping between query and reference
      • Pileup – structured access to data by individual reference position

Can be used to create your own C++ programs.

IHE Wiki

IHE Wiki


Description

Open source, freely available (GPL license), easy to use C++ APIs

  • General Operation Classes including:
    • File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
    • String processing
    • Parameter Parsing
  • Statistical Genetic Specific Classes including:
    • Handling Common file formats – SAM/BAM, FASTQ, GLF, VCF (coming soon)
      • Accessors to get/set values
      • Indexed access to BAM files
    • Utility classes, including:
      • Cigar – interpretation and mapping between query and reference
      • Pileup – structured access to data by individual reference position

Can be used to create your own C++ programs.

HL7 Wiki

HL7 Wiki


Description

Open source, freely available (GPL license), easy to use C++ APIs

  • General Operation Classes including:
    • File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
    • String processing
    • Parameter Parsing
  • Statistical Genetic Specific Classes including:
    • Handling Common file formats – SAM/BAM, FASTQ, GLF, VCF (coming soon)
      • Accessors to get/set values
      • Indexed access to BAM files
    • Utility classes, including:
      • Cigar – interpretation and mapping between query and reference
      • Pileup – structured access to data by individual reference position

Can be used to create your own C++ programs.

Clinfowiki

Clinfowiki


Description

Open source, freely available (GPL license), easy to use C++ APIs

  • General Operation Classes including:
    • File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
    • String processing
    • Parameter Parsing
  • Statistical Genetic Specific Classes including:
    • Handling Common file formats – SAM/BAM, FASTQ, GLF, VCF (coming soon)
      • Accessors to get/set values
      • Indexed access to BAM files
    • Utility classes, including:
      • Cigar – interpretation and mapping between query and reference
      • Pileup – structured access to data by individual reference position

Can be used to create your own C++ programs.

OpenWetWare

OpenWetWare


Description

Open source, freely available (GPL license), easy to use C++ APIs

  • General Operation Classes including:
    • File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
    • String processing
    • Parameter Parsing
  • Statistical Genetic Specific Classes including:
    • Handling Common file formats – SAM/BAM, FASTQ, GLF, VCF (coming soon)
      • Accessors to get/set values
      • Indexed access to BAM files
    • Utility classes, including:
      • Cigar – interpretation and mapping between query and reference
      • Pileup – structured access to data by individual reference position

Can be used to create your own C++ programs.

Statistical Genetics Wiki

Statistical Genetics Wiki


Description

Open source, freely available (GPL license), easy to use C++ APIs

  • General Operation Classes including:
    • File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
    • String processing
    • Parameter Parsing
  • Statistical Genetic Specific Classes including:
    • Handling Common file formats – SAM/BAM, FASTQ, GLF, VCF (coming soon)
      • Accessors to get/set values
      • Indexed access to BAM files
    • Utility classes, including:
      • Cigar – interpretation and mapping between query and reference
      • Pileup – structured access to data by individual reference position

Can be used to create your own C++ programs.

Cloud-Standards.org

Cloud-Standards.org


Description

Open source, freely available (GPL license), easy to use C++ APIs

  • General Operation Classes including:
    • File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
    • String processing
    • Parameter Parsing
  • Statistical Genetic Specific Classes including:
    • Handling Common file formats – SAM/BAM, FASTQ, GLF, VCF (coming soon)
      • Accessors to get/set values
      • Indexed access to BAM files
    • Utility classes, including:
      • Cigar – interpretation and mapping between query and reference
      • Pileup – structured access to data by individual reference position

Can be used to create your own C++ programs.

WikiBooks

WikiBooks


Description

Open source, freely available (GPL license), easy to use C++ APIs

  • General Operation Classes including:
    • File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
    • String processing
    • Parameter Parsing
  • Statistical Genetic Specific Classes including:
    • Handling Common file formats – SAM/BAM, FASTQ, GLF, VCF (coming soon)
      • Accessors to get/set values
      • Indexed access to BAM files
    • Utility classes, including:
      • Cigar – interpretation and mapping between query and reference
      • Pileup – structured access to data by individual reference position

Can be used to create your own C++ programs.

LIMSwiki

LIMSwiki


Description

Open source, freely available (GPL license), easy to use C++ APIs

  • General Operation Classes including:
    • File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
    • String processing
    • Parameter Parsing
  • Statistical Genetic Specific Classes including:
    • Handling Common file formats – SAM/BAM, FASTQ, GLF, VCF (coming soon)
      • Accessors to get/set values
      • Indexed access to BAM files
    • Utility classes, including:
      • Cigar – interpretation and mapping between query and reference
      • Pileup – structured access to data by individual reference position

Can be used to create your own C++ programs.

Wikiversity

Wikiversity


Description

Open source, freely available (GPL license), easy to use C++ APIs

  • General Operation Classes including:
    • File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
    • String processing
    • Parameter Parsing
  • Statistical Genetic Specific Classes including:
    • Handling Common file formats – SAM/BAM, FASTQ, GLF, VCF (coming soon)
      • Accessors to get/set values
      • Indexed access to BAM files
    • Utility classes, including:
      • Cigar – interpretation and mapping between query and reference
      • Pileup – structured access to data by individual reference position

Can be used to create your own C++ programs.

Wikipedia

Wikipedia


Description

Open source, freely available (GPL license), easy to use C++ APIs

  • General Operation Classes including:
    • File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout
    • String processing
    • Parameter Parsing
  • Statistical Genetic Specific Classes including:
    • Handling Common file formats – SAM/BAM, FASTQ, GLF, VCF (coming soon)
      • Accessors to get/set values
      • Indexed access to BAM files
    • Utility classes, including:
      • Cigar – interpretation and mapping between query and reference
      • Pileup – structured access to data by individual reference position

Can be used to create your own C++ programs.