Welcome to Jupyter: Improving collaboration and reproduction in psychological research by using a notebook system

Jupyter Notebook, an open-source interactive web application for the data science and scientific computing community (and with some of the features of an electronic laboratory notebook), has been publicly available since 2015, helping scientists make computational records of their research. In this 2018 tutorial article by Friedrich-Schiller-Universität Jena's Phillipp Sprengholz, the installation procedures and features are presented, particularly in the context of aiding psychological researchers with their efforts in making research more reproducible and shareable.

Importance of LIMS for Biobanks

Any entity that stores biological samples can be called a Biobank. However, the term ‘Biobank’ is most commonly used for entities that store biological specimens on a large scale to provide them as a service for internal or external entities like researchers. Biobanks have to offer unbiased and high-quality samples using well-designed and documented procedures. This ensures a biological specimen is kept in a controlled environment and guarantees the ethical aspect of sample collection.

What the New FDA Guidance for ICH GCP E6 R2 Means for Sponsors and CROs

What the New FDA Guidance for ICH GCP E6 R2 Means for Sponsors and CROsFDA Guidance for Good Clinical Practice (GCP) is an international quality standard defined by the International Council for Harmonization (ICH) that governs ethical and scientific considerations for designing, conducting, recording and reporting trials involving human subjects. Compliance with FDA Guidance for GCP in clinical trials helps to assure that the rights, well-being and safety of trial participants are protected and that the data generated in the trial is credible.

Commmon Causes of LIMS Implementation Failures

Commmon Causes of LIMS Implementation FailuresDue to the complex processes and technologies utilized in labs, and the many different aspects of the enterprise that laboratory systems touch, success in laboratory information management system (LIMS) projects can be difficult to achieve.

Secure Client Portal for Seamless Communication with Your Clients

One of the biggest challenges for laboratories is to find a way of directly and easily communicating with their customers through a secure digital channel. An easy communication channel often leads to a hassle-free experience for the laboratory and a happy customer for them. For better laboratory operations and efficient customer service, several LIMS vendors introduced a client portal.

Laboratory Informatics Weekly Update – Volume 16, Issue 24

June 13, 2018 Laboratory Informatics Weekly Update Volume 16, Issue 24   In This Issue  Tutorials A Guide for Management: Successfully Applying Laboratory Systems to Your Organization’s WorkThis recorded Lab Informatics Tutorial series is designed as a management level view of laboratory systems and is appropriate for anyone planning, reviewing, or approving the acquisition of laboratory informatics. A background in science is not necessary to follow the presented material. Its purpose is to provide you with an understanding of how these technologies (Laboratory Information Management Systems, Electronic Laboratory Notebooks, Scientific Data Management Systems, Laboratory Execution Systems, Instrument Data Systems, and…

Developing a file system structure to solve healthcare big data storage and archiving problems using a distributed file system

There's been plenty of talk about big data management over the past few years, particularly in the domain of software-based management of said data. But what of the IT infrastructure, particularly in the world of heathcare, where file size and number continue to grow? Ergüzen and Ünver describe in this 2018 paper published in Applied Sciences how they researched and developed a modern file system structure that handles the intricacies of big data in healthcare for Kırıkkale University. After discussing big data problems and common architectures, the duo lay out the various puzzle pieces that make up their file system, reporting system performance "97% better than the NoSQL system, 80% better than the RDBMS, and 74% better than the operating system" via improvements in read-write performance, robustness, load balancing, integration, security, and scalability.

Benefits and Best Practices for Integrating Laboratory Instruments with LIMS

Benefits and Best Practices for Integrating Laboratory Instruments with LIMSDue to technological advances in laboratory instruments and higher throughput processes, data volumes in modern analytical laboratories have increased dramatically over the last several decades. While this increased data volume presents the opportunity to improve innovation and enable timely and effective business decisions, it also presents significant data management and processing challenges. In order to meet the challenge of turning this data into knowledge, laboratories are looking to automate and integrate laboratory operations and processes as much as possible in order to provide digital continuity throughout the product lifecycle.

American Whistleblower, Test America, Hunters Point Shipyard Cover-up and Michael Madry

A major cover-up of the Hunters Point shipyard was the falsification of asbestos tests by Test America formerly owned by H.I.G. Capital whose owners were also bundling money to Hillary Clinton. They fired Test America Quality Assurance Manager Michael Madry who blew the whistle.

CloudLIMS Back from the 2018 ASCO Annual Meeting

We are back from the 2018 ASCO Annual Meeting, held in McCormick Place, Chicago, United States. Over 39,000 oncology professionals gathered from across the globe to discuss modern treatment methods, new therapies, and current controversies in the field of oncology.

Laboratory Informatics Weekly Update – Volume 16, Issue 23

June 6, 2018 Laboratory Informatics Weekly Update Volume 16, Issue 23   In This Issue  Tutorials A Guide for Management: Successfully Applying Laboratory Systems to Your Organization’s WorkThis recorded Lab Informatics Tutorial series is designed as a management level view of laboratory systems and is appropriate for anyone planning, reviewing, or approving the acquisition of laboratory informatics. A background in science is not necessary to follow the presented material. Its purpose is to provide you with an understanding of how these technologies (Laboratory Information Management Systems, Electronic Laboratory Notebooks, Scientific Data Management Systems, Laboratory Execution Systems, Instrument Data Systems, and…

DataCare: Big data analytics solution for intelligent healthcare management

In this 2018 paper published in the International Journal of Interactive Multimedia and Artificial Intelligence , Baldominos et al. present DataCare, a scalable healthcare data management solution built on a big data architecture to improve healthcare performance, including patient outcomes. Designed to provide "a complete architecture to retrieve data from sensors installed in the healthcare center, process and analyze it, and finally obtain relevant information, which is displayed in a user-friendly dashboard," the researchers explain the architecture and how it was evaluated in a real-life facility in Madrid, Spain. They also explain how key performance indicators are affected and how the system could be improved in the future.